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Home PCR Detailed Troubleshooting Tips for PCR

Detailed Troubleshooting Tips for PCR

This is a detailed troubleshooting tip for PCR.

Why do I have non-specific bands when I run my gel?

CausesTemplate concentration is inappropriate

MeasuresUse appropriate template concentrations. For a 50 μl

PCR reaction recommended concentrations are:

human genomic DNA= 0.1-1 μg; E.coli genomic

DNA = 10-100ng; lphage DNA= 0.5-2.5 ng;

plasmid DNA 10-100 ng

CausesDamaged template DNA

MeasuresMinimize damage to template DNA by avoiding vortexing,

heat treatment, strong UV, shearing or ultra sonication

CausesDenaturation time is too short

MeasuresOptimize the denaturation time in increments of 5 seconds

CausesDenaturation temperature is too low

MeasuresOptimize the temperature in increments of 0.5°C

CausesAnnealing temperature is too low

MeasuresRaise the temperature in increments of 2°C

CausesExtension time is too short

MeasuresLengthen the extension time in increments of 1 minute

CausesCycle number is too high

MeasuresReduce the number of cycles in decrements of 2 cycles



Last Updated ( Monday, 06 October 2008 04:37 )